dsh-ezprot-plugin
Plug-and-play proteomics analysis bundle for DeepSeek Harness: auto-managed R 4.4 runtime, step-wise traceable pipeline (normalize / PCA / batch / DEA / enrichment / GSEA), cached GO-KEGG annotation backgrounds.
AI Analysis
核心用途是为生物信息学研究提供一站式蛋白质组学数据分析。适合科研人员通过自然语言驱动 Agent 完成数据质控、分析并生成报告。
Install
$
npx -p @deepseek-ai/dsh dsh plugin --profile web add github:YukunR/dsh-ezprot-pluginREADME
Read the full README ↗Usage
Just talk to the agent. For example:
My proteomics data is at
D:\my-experiment\origin_data.txtwith sample groups inD:\my-experiment\sample_info.txt, mouse samples. Compare HC and HD against NC.
The agent will inspect and QC your data, confirm the comparisons with you, run the analysis step by step, and write an interpretation report (top proteins, enriched pathways, candidate targets). Detailed instructions: biologist's guide (中文).