Configuration

The literature-search row in cordis.patch.yml:

Key	Default	Meaning
`enabled`	`true`	Whether the plugin registers its tools
`pubmedEnabled`	`true`	Whether the three `pubmed_*` tools are registered
`pubmedBaseUrl`	`https://eutils.ncbi.nlm.nih.gov/entrez/eutils`	E-utilities root
`pubmedTool` / `pubmedEmail`	`dsh-literature-search` / empty	The `tool` / `email` parameters sent on every request (required by NCBI's usage policy)
`pubmedApiKeyEnv` / `pubmedApiKey`	`NCBI_API_KEY` / empty	Key reference / inline key
`pubmedRateLimitMs`	`0`	Minimum interval between requests; 0 = 350 ms without a key, 110 ms with one
`scholarEnabled`	`true`	Whether the two `scholar_*` tools are registered
`scholarProvider`	`auto`	`auto` (SerpApi when a key exists, else HTML) / `serpapi` / `html`
`scholarBaseUrl` / `scholarSerpApiBaseUrl`	Official Google / SerpApi URLs	Can point at a self-hosted proxy
`scholarSerpApiKeyEnv` / `scholarSerpApiKey`	`SERPAPI_API_KEY` / empty	Key reference / inline key
`scholarHl`	`en`	Google Scholar interface language
`scholarRateLimitMs`	`0`	0 = 2500 ms for HTML, 250 ms for SerpApi
`defaultMaxResults` / `maxResultsCap`	`10` / `50`	Count when the model does not specify / the maximum requestable
`abstractMaxChars`	`600`	Per-paper abstract or snippet limit; 0 = omit abstracts
`requestTimeoutMs` / `maxRetries` / `retryBackoffMs`	`30000` / `3` / `1000`	Per-request timeout, retry count and backoff base (429/5xx are retried, honouring `Retry-After`)
`toolTimeoutMs`	`120000`	Budget for one tool call
`userAgent`	empty (built-in Chrome UA)	Overrides the default UA
`promptGuidance` / `promptOrder`	`true` / `155`	Whether the system-prompt paragraph is registered, and its order

Usage examples

On the model side, plain language is enough:

Use pubmed_search for "base editing" reviews published after 2020, take 5, then use pubmed_related on the first one to find 5 related papers.

Use scholar_search to find the 10 most-cited "CRISPR base editing" papers, then pass the first resultId to scholar_cite for BibTeX.

Example output (pubmed_paper 33301246):

PubMed record: Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
   2020 · The New England journal of medicine · vol 383 · no 27 · pp 2603-2615
   Polack, Fernando P, Thomas, Stephen J, Kitchin, Nicholas et al. (29 authors)
   DOI: 10.1056/NEJMoa2034577 · PMID: 33301246 · PMC: PMC7745181
   https://pubmed.ncbi.nlm.nih.gov/33301246/
   Types: Clinical Trial, Phase III, Journal Article, Randomized Controlled Trial
   MeSH: BNT162 Vaccine, COVID-19, SARS-CoV-2, ...
   Abstract: BACKGROUND: ...

dsh-literature-search

같은 패키지 이름의 다른 저장소

설치

문서

Configuration

Usage examples