dsh-medomni

Usage examples

Chest X-ray report:

"Generate a radiology report for this chest X-ray: /path/to/chest_xray.png"

calls xray_report_medgemma, xray_report_maira, or xray_grounded_report_maira when finding evidence/bounding boxes are useful.

Find something specific, by name, on any of the five modalities:

"Segment the gallstone in this ultrasound image." "Are there any microaneurysms in this fundus photo?"

calls the matching _segmentation_biomedparse tool only when you ask for segmentation, masks, overlays, or localization. BiomedParse takes any free-text finding or anatomical structure, but its mask is localization, not diagnosis.

Disambiguate a vague ultrasound request first:

"What's in this ultrasound before you segment anything?"

calls ultrasound_classify_biomedclip to narrow down anatomy/pathology, then a segmentation tool with the winning label as the prompt.

Whole-body organ segmentation on a CT or MRI volume:

"Segment the liver and kidneys in this CT scan: /path/to/scan.nii.gz"

calls ct_segmentation_totalseg for the fixed anatomical-structure list, or ct_segmentation_biomedparse if you'd rather name a pathology than an organ.

Prior-vs-current comparison:

"Compare this current chest X-ray to the prior one and describe interval change."

calls xray_longitudinal_comparison with both images.