dsh-revbayes-forge-pack-chromosome

Chromosome Evolution pack

Development fixture package dsh-revbayes-forge-pack-chromosome of the RevBayes Forge plugin (dsh-revbayes-forge).

English

• Pack id: chromosome
• Tool: revbayes_generate_chromosome
• Maturity: golden

What it generates. Builds chromosome-number evolution scripts: ChromEvol, BiChroM with a binary trait, and ChromoSSE. Counts tables are bounded by the maximum chromosome number, the state space must match the data, and gain/loss/polyploidy rates are kept non-negative.

Analyses.

Analysis	Title	Canonical golden
chromevol	ChromEvol	chromevol.Rev
bichrom	BiChroM	bichrom.Rev
chromosse	ChromoSSE	chromosse.Rev

Full spec fields, data requirements, and limitations: docs/en/model-packs.md.

Fixtures. Files under fixtures/ are synthetic small datasets shipped with the repository; they back the golden scripts, canonical specs, and runtime checks used by npm test and npm run test:runtime.

Enablement. Enable this pack in the settings page (RevBayes Forge → Packs); no separate installation is needed.

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中文

• Pack id：chromosome
• 工具：revbayes_generate_chromosome
• 成熟度：golden

生成内容。 生成染色体数目演化脚本：ChromEvol、带二元性状的 BiChroM，以及 ChromoSSE。校验计数不超过最大染色体数、状态空间与数据一致、增益/丢失/多倍化速率非负。

分析列表。

Analysis	Title	Canonical golden
chromevol	ChromEvol	chromevol.Rev
bichrom	BiChroM	bichrom.Rev
chromosse	ChromoSSE	chromosse.Rev

完整 spec 字段、数据要求与限制：docs/zh/model-packs.md。

夹具数据。 fixtures/ 下的文件均为随仓库分发的合成小数据，支撑 golden 脚本、canonical spec 与运行时检查，供 npm test 与 npm run test:runtime 使用。

启用方式。 在设置页（RevBayes Forge → Packs）勾选启用即可，无需单独安装。