dsh-revbayes-forge-pack-host-repertoire

Host Repertoire pack

Development fixture package dsh-revbayes-forge-pack-host-repertoire of the RevBayes Forge plugin (dsh-revbayes-forge).

English

• Pack id: host-repertoire
• Tool: revbayes_generate_host
• Maturity: experimental

What it generates. Builds host–parasite repertoire scripts from a host tree, a parasite tree, and an association matrix, including host-switch rate modifiers (fnHostSwitchRateModifier), data-augmented likelihoods (dnPhyloCTMCDASequence), and character-history moves. The model is data-hungry and the pack ships as experimental, disabled by default.

Analyses.

Analysis	Title	Canonical golden
host-repertoire	host-repertoire	—
host_repertoire	Host repertoire	host_repertoire.Rev

Full spec fields, data requirements, and limitations: docs/en/model-packs.md.

Fixtures. Files under fixtures/ are synthetic small datasets shipped with the repository; they back the golden scripts, canonical specs, and runtime checks used by npm test and npm run test:runtime.

Enablement. Enable this pack in the settings page (RevBayes Forge → Packs); no separate installation is needed.

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中文

• Pack id：host-repertoire
• 工具：revbayes_generate_host
• 成熟度：experimental

生成内容。 由寄主树、寄生树与关联矩阵生成 host repertoire 脚本，包含宿主转换速率修饰（fnHostSwitchRateModifier）、数据增广似然（dnPhyloCTMCDASequence）与性状历史 move。该模型对数据要求高，本包为 experimental，默认不启用。

分析列表。

Analysis	Title	Canonical golden
host-repertoire	host-repertoire	—
host_repertoire	Host repertoire	host_repertoire.Rev

完整 spec 字段、数据要求与限制：docs/zh/model-packs.md。

夹具数据。 fixtures/ 下的文件均为随仓库分发的合成小数据，支撑 golden 脚本、canonical spec 与运行时检查，供 npm test 与 npm run test:runtime 使用。

启用方式。 在设置页（RevBayes Forge → Packs）勾选启用即可，无需单独安装。