ZengZichao/dsh-revbayes-forge--packages-pack-biogeo ↗★ 0
dsh-revbayes-forge-pack-biogeo
Development fixture package for the biogeo model pack bundled inside dsh-revbayes-forge. 适合需要构建 DEC、GeoSSE 或 TimeFIG 等生物地理学演化脚本的开发者。
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Biogeography pack
Development fixture package dsh-revbayes-forge-pack-biogeo of the RevBayes Forge plugin (dsh-revbayes-forge).
English
- Pack id:
biogeo - Tool:
revbayes_generate_biogeo - Maturity:
golden
What it generates. Builds biogeographic scripts: DEC range evolution, GeoSSE, feature-informed geographic state-dependent speciation-extinction (FIG / MultiFIG), and epoch-structured TimeFIG. Range, area, adjacency, and epoch inputs are aligned and validated before generation; TimeFIG additionally requires an epoch list.
Analyses.
| Analysis | Title | Canonical golden |
|---|---|---|
dec | DEC | dec.Rev |
geosse | GeoSSE | geosse.Rev |
fig | FIG | fig.Rev |
multifig | MultiFIG | — |
timefig | TimeFIG | — |
Full spec fields, data requirements, and limitations: docs/en/model-packs.md.
Fixtures. Files under fixtures/ are synthetic small datasets shipped with the repository; they back the golden scripts, canonical specs, and runtime checks used by npm test and npm run test:runtime.
Enablement. Enable this pack in the settings page (RevBayes Forge → Packs); no separate installation is needed.
中文
- Pack id：
biogeo - 工具：
revbayes_generate_biogeo - 成熟度：
golden
生成内容。 生成生物地理学脚本：DEC 分布区演化、GeoSSE、feature-informed 地理状态依赖物种形成-灭绝（FIG / MultiFIG），以及带 epoch 结构的 TimeFIG。生成前对分布区、区域、邻接与 epoch 输入做对齐与校验；TimeFIG 还要求提供 epoch 列表。
分析列表。
| Analysis | Title | Canonical golden |
|---|---|---|
dec | DEC | dec.Rev |
geosse | GeoSSE | geosse.Rev |
fig | FIG | fig.Rev |
multifig | MultiFIG | — |
timefig | TimeFIG | — |
完整 spec 字段、数据要求与限制：docs/zh/model-packs.md。
夹具数据。 fixtures/ 下的文件均为随仓库分发的合成小数据，支撑 golden 脚本、canonical spec 与运行时检查，供 npm test 与 npm run test:runtime 使用。
启用方式。 在设置页（RevBayes Forge → Packs）勾选启用即可，无需单独安装。